Next Generation Sequencing Data Analysis | Avadis NGS

What is Avadis NGS?

Avadis® is the data mining and visualization platform at the core of all bioinformatics products developed by Strand Scientific Intelligence.

The platform has been enhanced with state-of-the-art algorithms for analysis, visualization and management of next-generation sequencing data on a wide range of computing infrastructures. More

  • 1 Solve the mysteries of biology with Avadis NGS

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  • 1 Find expression levels of small RNA genes
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  • 1 Align sequence data from DNA-Seq, ChIP-Seq, and Small RNA-Seq experiments
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  • 1 Identify targets of miRNAs common to multiple databases
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  • 1 Identify significant SNPs using an intuitive filtering framework
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  • 1 Visualize billions of reads in the Genome Browser
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  • 1 Easily download organism annotations in the Annotations Manager
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  • 1 Find transcription factor binding sites with ChIP-Seq experiments
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  • 1 Find and filter out reads with poor mapping and alignment qualities
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  • 1 Determine regulation of gene expression from multiple RNA-Seq samples
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  • 1 Locate large structural variants in DNA-Seq data
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  • 1 Find novel splice junctions with RNA-Seq experiments
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  • 1 Determine genes overlapping in entity lists
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  • 1 Contextualize biological information with built-in pathways and GO analysis
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Free 20-Day Trial

Experience a new standard in NGS bioinformatics. We'll provide you with the annotations you need to analyze your SAM/BAM, ELAND or FASTQ files.

Monthly Webinars


  • 18th April 2012
    10AM Pacific Standard

  • 19th April 2012
    11AM Central European

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Recent Updates


  • Avadis NGS version 1.3.1 released. Download

  • Video on MiSeq™ in Avadis NGS 1.3. Watch

  • New blog post on COBWeb algorithm. Read