Overview of Sequencing Applications
Avadis NGS is an integrated platform that provides analysis, management and visualization tools for next-generation sequencing data. It supports extensive workflows for alignment, RNA-Seq, small RNA-Seq, DNA-Seq, and ChIP-Seq experiments.
Avadis NGS comes pre-packaged with comprehensive annotations for several standard organisms from various sources and enables you to create annotations for other organisms. It includes an embedded feature-rich Genome Browser and provides custom visualizations to provide an intuitive feel for analysis results. Various quality control plots and filtering steps ensure that any poor quality data is kept out of downstream analysis. Biological interpretation and discovery tools such as Gene Ontology enrichment, GSEA, NLP derived interaction network analysis, and significant pathways analysis enable taking the analysis all the way from reads to the end goal of the experiment.