Small RNA-Seq
Analyze your small RNA data to find expression levels of various small RNA species. Detect novel small RNA genes. Visualize the results in small RNA-specific gene view. Identify targets of miRNAs common to multiple target prediction databases. Download the Small RNA Highlights Guide
Quantification
Find the expression levels of small RNA genes and mature miRNAs. Normalize the read counts using the approach of DESeq, TMM, or Quantile normalization. Visualize results in the Small RNA Gene View.
miRNA Target Analysis
Identify protein-coding genes targeted by mature miRNAs based on mappings from various target prediction databases - TargetScan, PicTar, TarBase, microRNA.org, PITA.
Novel Small RNA Discovery
Detect novel small RNA genes and classify them as miRNA, snoRNA, scRNA, or tRNA. Identify high-confidence predictions with confidence values and conservation scores. Find annotation discrepancies of known genes from the read coverage patterns.
Carry out GO Analysis
Carry out GO analysis on target entity lists to identify significant GO terms.
Pathway Analysis
Use the packaged database of 2 million interactions (with supporting PubMed references) to find relationships between genes.
