Quality Inspection
Base Quality QC Plot
Watch this video to learn more about how Avadis NGS can help you identify poor quality reads, based on the average base quality of your Illumina data in any of the lanes, tiles, and flows.
Alignment Status QC Plot
Watch this video to learn more about how Avadis NGS lets you identify poor quality reads, based on the alignment status of your imported Illumina data.
Alignment Score QC Plot
Watch this video to learn more about how Avadis NGS lets you assess the quality of your data, based on alignment score and mapping quality of reads as well as the distribution of mate statuses in the case of mate pair or paired end libraries.
Fix Mate Status
Watch this video to learn more about how Avadis NGS allows you to fix the mate status of inconsistent reads in mate pair or paired end libraries.
